LaCava Research Wiki

Here's a summary of goals we're targetting in this pipeline development.

These need to be updated to reflect our latest understanding.

Assess tryptic fragments

%Heavy labeling

%Heavy mixing

Recent questions:

1. Should evidence.txt be used in any of the above?
2. Trying to set up a MQ pipeline using MT302 as an example.

Resources

The MaxQuant computational platform for mass spectrometry–based shotgun proteomics (2016)

Additional tutorial based on the 2016 MaxQuant Summer School presentations

Description of MQ tables